Changes in version 0.3.3.9999                      

  - fix issue when dput not working with S7 elements affecting plot code
    generation
  - ggrepel dependency now requires R > 4.5

                 Changes in version 0.3.3 (2026-02-01)                  

  - fix issue when color was set to "none" in ggkmrisktable
  - added km_median_table_y_multiplier for better control on where to
    put the table on y
  - added km_linewidth argument
  - fixed issue with the new ggplot2 geom_violin quantile syntax

                 Changes in version 0.3.2 (2025-09-15)                  

  - added to possible positions on where to put the N of observations in
    Mean and Median tabs: (fixed, mean, median)
  - added check box to use geom_path: Check box for lines: Respect data
    order? (requested by Mark Sale, Certara)
  - small fixes in the shiny app position_beewwarm and
    position_quasirandom removing groupOnX
  - added arguments show.exptile_values, show.exptile_values_pos and
    show.exptile_values_order to ggkmrisktable() (requested by Mathilde
    Marchand, Certara)
  - added argument km_linewidth to control km curves linewidths
    (requested by Sejung Hwang, UCSF)
  - deprecated gglogisticexpdist() and ggcontinuousexpdist() in favor of
    ggresponseexpdist() with model_type ="logistic" vs "loess" vs
    "linear" vs "none"
  - several ER functions bugs were fixed e.g. when
    exposure_distributionand exposure_metric_split where set to "none"
  - several additional features to color by endpoint using
    fit_by_color_fill TRUE FALSE
  - several arguments to better control distribution y position e.g.
    dist_scale, dist_position_scaler , dist_offset
  - possibility to specify provide custom names for placebo and standard
    of care via exposure_metric_soc_name and exposure_metric_plac_value
  - possibility to specify "boxplots" for the exposure_distribution
    argument in ggresponseexpdist
  - possibility to specify "none", "%","N (%)","N" for
    exposure_distribution_percent
  - possibility to specify "none","left","right" for
    exposure_distribution_Ntotal
  - separately control by dose and by exptile mean size
    mean_obs_bydose_text_size and mean_obs_byexptile_text_size
  - separately control where to put the N by dose or by exptile using
    N_byexptile_ypos or N_bydose_ypos with options "with
    means","top","bottom","none", text size is controlled by N_text_size
  - added option to add N total by dose for lineranges via
    lineranges_Ntotal with options "none","left","right"
  - possibility to return the plot and a list of all datasets needed to
    redo all layers from scratch via return_list
  - give user more controls on legends when using ggresponseexpdist()
    with arguments: color_legend_title, fill_legend_title,
    linetype_legend_title, shape_legend_title, linetype_legend_title,
    and legend_order

                 Changes in version 0.3.1 (2024-01-15)                  

  - rebuilt docs fixed broken link
  - fixing some regressions introduced by bookmarking
  - fixing some errors by the new R rules for logical comparison length
    with | versus ||
  - fixing error in aspect.ratio not numeric (was also fixed in ggplot2)
  - fixing other regressions with GGally::ggpairs() color and group
  - added support of pasting values of two/three variables where it was
    just a placeholder
  - added function ggkmrisktable() to add facetable risk tables, km and
    by ntiles split exposures
  - added function gglogisticexpdist() and ggcontinuousexpdist() to add
    facetable logistic/linear regression with exposures split to ntiles
    with exposure distributions by dose/group and optional y axis
    projections
  - added link to github pages in description thanks to @olivroy
  - Fix part of ggplot2 3.4.0 deprecation warnings. (#27, @olivroy)

                 Changes in version 0.3.0 (2023-03-26)                  

  - added options to drop levels for user discrete shape and linetype
    scales
  - fixed GGally::ggpairs() group input and added ability to combine y
    variables
  - fixed issue with barplot flip applied to bivariate plots
  - fixed issues with barplot percent labels when position is fill
  - added checkboxes to parse x and y axis labels text
  - added ability to regenerate state of apps to have a better UX
    workflow in Phoenix (James Craig, #28)
  - removed Welcome message and added padding
  - James Craig added as a co-author

                 Changes in version 0.2.2 (2022-05-16)                  

  - fixed bug in linear model equation where slope and intercept values
    were switched
  - fixed bug where flip barplot was not working (auto flipped barplot
    already supported)
  - added group aesthetic and other enhancements for pairs plot
  - bug fixes for expansion, zooming with user input (plots with only x
    variable(s) or only y variable(s))
  - restored target window annotations to work with factor/character x
    axis
  - added the possibility to change the size and linetype of density
    plots
  - added the possibility to choose the shape of boxplot outlier points
  - added options for x and y scale tick formatting are now visible when
    pairs plot are active
  - added options for identity line and for placement of custom/target
    text at plot edges
  - added checkbox to recode numeric variables with -99 to missing
  - removed ggstance dependency by adding needed positions to global.r
  - fixed typos in Visualizing Summary Data vignette data labels

                 Changes in version 0.2.1 (2021-06-22)                  

  - added a new method for factor reordering min/max difference
  - added the mean +/- multiples of standard deviations summary using
    the mean_sdl function
  - allowed to transform the label for mean and median to 10^ (useful
    when the x/y axis are logged)
  - fixed a namespace bug with calling the scales package functions like
    muted or trans_xxx without the package being loaded, now using ::.
  - fixed a bug with updateColourInput which is now only available from
    the colourpicker package
  - reactivating the colorgradient widget after shinyjqui bug was
    updated and fixed
  - added distiller continuous Blues and brewer discrete palettes
  - added possibility to specify palette for viridis discrete and
    continuous with possibility to reverse the scale
  - added more support for POSIXct variables where previously they were
    being treated as character
  - automatic zoom slider is now working with POSIXct
  - automatic Slider or User zoom now is controllable when facets scales
    are free
  - discrete scale is no longer applied when the x and or y variable
    inherits from POSIXct
  - modifying X/Y scale expansion is now optional (fixed auto expansion
    with free facets)

                 Changes in version 0.2.0 (2021-02-15)                  

  - Added Violin plots
  - Added options and fixes for histograms, barplots and densities
  - Added options for Median/Mean/N labels (N digits, justification,
    edge positions.)
  - Added points position_quasirandom and position_beeswarm
  - Added multiple enhancements for theme control like panel.border,
    plot.tag.position and X and Y Axes Titles formatting
  - Added multiple enhancements and options for ggpairs
  - logticks and rug marks can now be on the outside of plot panel
  - coordinates cartesian clip can now be set to off
  - x/y axis percent and comma labels format now works for univariate
    plots
  - x/y zoom now works when more than one x and/or y variables are
    selected
  - long x/y discrete axes labels can now be wrapped to specified length
  - UI updates and auto hiding for univariate plots, pairs, km
  - Boxplots UI rework
  - Readme updated
  - summary level data vignette updated

                 Changes in version 0.1.9 (2020-12-16)                  

  - Made errorbars for Median/PI and Mean/CI ignore mapped size
  - fixed a bug when labels from Median/PI and Mean/CI and data are used
  - table1 enhancements: na.is.category, render.missing, footnote and
    caption.
  - table1 enhancements: added N missing and Sum to stats.
  - added second field to order and recode variables after stacking e.g.
    for xvars and yvars
  - added two new by variable factor sorting methods: 'N Unique' and
    'Sum'
  - fixed a bug when custom reorder ignored the current order as
    starting point
  - added ggplot tag field
  - fixed a bug when user was selecting the same variables for x and y
    now stacking x and y is separate.
  - fixed a bug in x axis label and barplots in some special cases
  - updated UI or barplot and Density and ability to suppress label
    legend
  - UI updates to only show the relevant options for pairs plot and
    histogram/barplot
  - Automatic color theme switching to avoid not enough color or fill
    errors
  - switched to github actions

                 Changes in version 0.1.8 (2020-11-05)                  

  - Added possibility to use more than one x variable(s) and or no y
    variable(s)
  - Added option for an explicit Missing Category with custom cuts
  - Added option to compute the inverse of Numeric variables
  - Moved the rounding to after division/inverse
  - Added possibility to round data labels before plotting
  - Added a blank shape type so we can do multiple y(s) when some layers
    do not have a point plotted.
  - Added Docker configuration

                 Changes in version 0.1.7 (2020-07-21)                  

  - Added support for semicolon separated files and added package
    version in App Title
  - Added geom_rug support for x/y and for additional variable(s)
  - Added geom_ribbon for mean/CI and geom_errorbar for median/PI (with
    UI updates)
  - Enable dodge for mean/CI and median/PI to take into account the
    specified width
  - Updated UI for facets options and added controls for bold, angle and
    justification
  - Allowing specifying multi_line=TRUE for all facet labellers
  - Added theme options for strip.switch.pad.grid and
    strip.switch.pad.wrap
  - Added possibility to completely remove the facet strips background
    and outline
  - Updated UI for legends options and added controls for legend/legend
    box, justification and margins
  - Added control for legend.spacing.y
  - Added continuous x/y scale(s) asymmetrical expansion values
  - Added more position adjustments for points (e.g. dodge)
  - Minor enhancements for correlation coefficients
  - Updated UI for theme options
  - Added support for the break.time.by argument for risk table,
    enhanced the K-M UI and added inputs for conf.type and conf.lower
  - Fixed code generation issues by adding dependencies
  - Bumped the minimum R version to 3.6.0 and the minimum ggplot version
    to 3.3.1
  - Refreshed vignettes and readme screenshots

                 Changes in version 0.1.6 (2020-04-17)                  

  - withheld gradientInput addition (shinyjqui issue)
  - fixed a bug in risktable when nothing was selected
  - added controls for plot margins
  - added controls for legend margins
  - strip.position for facet_wrap and more labeller options
  - added parsed x and y axis titles
  - custom position for legends and specification of legend and items
    background fill
  - updated intro vignette

                 Changes in version 0.1.5 (2019-10-07)                  

  - let ggpairs plots reflect custom color scales
  - update the emax smoother to add e0
  - apply a fix for the weight aesthetic for emax smoother
  - update code to be compatible with breaking change from tidyr 1.0
  - user defined shape and linetype scales
  - user defined custom labels for custom x and y axes ticks
  - user can divide by a constant not just a column

                 Changes in version 0.1.4 (2019-09-03)                  

  - custom labels with text, label, text_repel and label_repel
  - user can now add more custom colors up to 20
  - added user control to specify mid color of continuous color scales
  - added user control to specify strip text colour and more
    colourpicker background color
  - order stacked data by sd of value
  - added smooth emax model via nls and parameter values
  - added parameter values for lm fit and made text size adjustable
  - viridis and custom continuous color scale
  - added possibility to divide multiple columns by a specified one
    (e.g. dose normalization)
  - "Treat as Categories:" now accepts character variables in addition
    to numeric.
  - "Treat as Numeric:" added to enable converting columns read as
    factors.
  - updated the docs for geom and stat_km() stat_kmband()
    stat_kmticks().

                 Changes in version 0.1.3 (2019-04-10)                  

  - UI and options improvements for KM (line sizes, transparency, ignore
    group and color), linetype mappping
  - changed default error in stat_kmbands(), borrowed stairstepn from
    ggalt and applying zoo::na.locf() to deal with NA.
  - added the possibility to add median survival with or without CI
  - Using ggpubr::stat_cor() to compute correlations for more
    flexibility and margin in facets
  - added ability to ignore grouping and or ignore color mapping for
    correlation coefficient
  - added possibility to dodge means and medians
  - added possibility to specify means and medians N and Values
    transparency and a default seed for text_repel
  - geom text,label, with repel variants and position dodge for median
    and mean labels
  - added transparency control for densities and histograms as well as
    linetype mappping
  - added binwidth control for histogram (user defined or auto), and
    position dodge
  - added window adjustment control for densities
  - linetypes for predefined quantiles
  - added the possibility to add one more therapeutic window and fixed a
    bug with categorical x axis
  - added possibility to remove x/y axis tick labels
  - fixes for continuous scales logic
  - Added initial support for GGally::ggpairs()

                 Changes in version 0.1.2 (2019-02-24)                  

  - bug fixed where in some cases plot data did not apply filtering
  - updated and expanded merge multiple levels of a factor
  - added mappings by shape for points and linetypes of lines and
    associated custom legends and possibility to ignore it
  - added the possibility of choosing more linetypes for lines
  - various UI improvements for points, lines, qr, smooth, median and
    mean
  - added options to control size and transparency of qr, smooth, median
    and mean lines and added predefined qr 25 and 75%
  - added options to force mean and median shapes
  - fixed bug in median line not honoring transparency when Median\PI
    selected with some UI tweaks
  - added more options for boxplot outliers (size and transparency)
  - separate color control for major and minor gridlines with the
    possibility to remove them
  - added annotation_logticks()
  - make faceting less prone to fail when user mistakenly choose the
    same variable in rows and columns
  - make user defined color/fill scales

                 Changes in version 0.1.1 (2018-09-27)                  

  - added options to control facets strip background fill and placement
  - added options to control panel spacing
  - reworked barplots to be able to sort by frequency or reverse
    frequency
  - histograms and densities gain more options and flexibility
  - added possibility to reorder factors by length of of another
    variable
  - added possibility to keep last row by id
  - added more options to label x and y axes ticks e.g. using
    prettyNum()
  - added styling options for horizontal and vertical reference lines
  - added more methods for the correlation coefficient
  - added p-values for slope(s) and adjusted Rsquare when a linear
    regression smoother is selected
  - fixed a bug where x and or y axis zoom would not work in some
    situations
  - added more stats from table1 as well as possibility to cut by
    quantiles eqcut()
  - added possibility to merge multiple levels of a factor
  - fixed bug where commas in label names broke up the factor levels
    when using "Recode/Reorder Categories"

                 Changes in version 0.1.0 (2018-04-25)                  

Initial CRAN release